Hoehme Lab • Research group
Multicellular systems biology • Image analysis • Multiscale liver models
Group
Kasimir Wansing, Daniel Hahne, Claus Stöpel, Andrea Fallmann, Adrian Friebel, Stefan Hoehme

Group members

Stefan Hoehme (Dr.rer.nat)
Head of research group

SH

Main focus of research
  • Image / Volume processing and analysis
  • Visualisation
  • Multiscale liver models
Working experience
  • Max Planck Institute for Human Cognitive and Brain Science (MPI CBS)
  • Max Planck Institute for Mathematics in the Sciences (MPI MIS)
  • Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
  • Interdisciplinary Centre for Bioinformatics (IZBI)
Awards & Grants
  • Reinhard Heinrich Doctoral Thesis Award 2011 (1st prize)
    by the European Society for Mathematical and Theoretical Biology (ESMTB)
    for best annual thesis from any area of Mathematical and Theoretical Biology
  • Grant: DFG Emmy-Noether-Programme (2015-2020)
  • Grant: BMBF LiSyM (Liver Systems Medicine) (2015-2020)

Daniel Hahne (Dr.rer.nat)
PostDoc
DH

Main focus of research
  • Image / Volume processing and analysis
  • Visualisation
  • Intracellular liver models
Working experience
  • Institute of Physics at Rheinische Friedrich-Wilhelms-Universität Bonn
  • COMPASS Experiment (CERN)

Adrian Friebel (Dipl.inf.)
PhD student
AF

Main focus of research
  • Image / Volume processing and analysis
  • Visualisation
  • Machine learning for image processing
Working experience
  • Institute for Process Control and Robotics (IPR) @ Karlsruhe Institute of Technology (KIT)
  • Interdisciplinary Centre for Bioinformatics (IZBI)

Kasimir Wansing (M.Sc.inf.)
PhD student
KW

Main focus of research
  • Agent-based modeling
Working experience
  • Institute of German Language and Literature, University of Leipzig
  • Department of Computational Linguistics, Institute of Computer Science, University of Leipzig:
    Master thesis "Iterated Adaptive Importance Sampling on Constituent Trees"

Claus Stöpel
(Dipl.biochem Dipl.ing)

PhD student
CS

Main focus of research
  • Software engineering / Architecture
  • Image / Volume processing and analysis
Working experience
  • Molecular oncology, Gynecological department - University Hospital Leipzig
  • MAGE-Group (Model of the Ageing Epigenome), Data-Visualization and analysis of High-Throughput Sequencing Methods (i.e. Chip-seq), software development, Bioinformatics University of Leipzig
  • Detection and Classifying of Prostate Cancer by Geometric Measurements, image-processing and analysis of prostate carcinoma microscopic images, development of algorithms, IZBI, University of Leipzig


Co-supervised students

Johannes Neitsch (Dipl.math.)
PhD student
(Member of DrasdoAG research group)


JN

Main focus of research
  • Agent-based Modeling
  • Physical Modeling of Cells, Flux and Diffusion in Tissue
  • Adhesion; Proliferation; Micro Pipettes; Optical Stretcher
  • Mass - Spring - Systems
Working experience
  • Institut National de Recherche en Informatique et en Automatique (INRIA)
  • Max Planck Institute of colloids and interfaces (MPIKG)
  • Interdisciplinary Centre for Bioinformatics (IZBI)
Alumni

Tim Johann (Dipl.phys.)
PhD student
(Shared with DrasdoAG research group)


TJ

Main focus of research
  • Software engineering / Architecture
Working experience
  • Modelling of Biological Processes Group, BioQuant, University of Heidelberg
  • EML Research gGmbH, Heidelberg (now HITS)
  • Astronomisches Rechen-Institut (Institute for Astronomical Computations), Heidelberg
  • Kirchhoff Institute of Physics, University of Heidelberg
  • Schrodinger Inc., Anterio Research, Mannheim